Installation

Get a copy of Neuroptimus

Install git and type:

Dependencies

The following python libraries are required:

  • python

  • numpy

  • eFEL

  • matplotlib

The following libraries are recommended:

  • neuron

  • scipy

  • PyQt5

  • inspyred

  • pyelectro

  • Pygmo

  • bluepyopt

  • ipyparallel

  • nest

You can get required or recommended libraries with the following command:

pip install -r requirements_minimal.txt

or

pip install -r requirements_full.txt

You can get individual package with pip:

pip install neuron

Build documentation

If you should require a local copy of the Neuroptimus documentation, you need a working install of Sphinx, then run the command:

sphinx-build ./doc <local build directory>

from the top-level neuroptimus directory where <local build directory> should be replaced with a custom filepath.

Test Platforms

The package was tested on the following systems:

  1. Ubuntu 22.04.1 LTS

  2. Ubuntu 20.04.6 LTS

  3. Fedora release 32 (Thirty Two) (neurofedora)